| 4. Round | 11/08/2006 | SpVgg Weiden | - | SpVgg Bayreuth | 0:0 | ||||
| 5. Round | 15/08/2006 | VfL Frohnlach | - | SpVgg Weiden | 1:3 |  |
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| 6. Round | 19/08/2006 | SpVgg Weiden | - | SC Fürstenfeldbruck | 1:1 | |
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| 7. Round | 25/08/2006 | Jahn Regensburg | - | SpVgg Weiden | 3:0 | ||||
| 8. Round | 30/08/2006 | SpVgg Weiden | - | Wacker Burghausen II | 2:1 | ||||
| 9. Round | 02/09/2006 | SpVgg Bayern Hof | - | SpVgg Weiden | 2:0 | ||||
| 10. Round | 09/09/2006 | SpVgg Weiden | - | SpVgg Unterhaching II | 1:0 | ||||
| 11. Round | 16/09/2006 | SpVgg Greuther Fürth II | - | SpVgg Weiden | 2:0 | ||||
| 20. Round | 18/11/2006 | SpVgg Weiden | - | Würzburger FV | 2:0 | ||||
| 21. Round | 26/11/2006 | 1. FC Nürnberg II | - | SpVgg Weiden | 3:0 | |
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| 22. Round | 02/12/2006 | SpVgg Weiden | - | FC Ismaning | 1:2 | ||||
| 23. Round | 09/12/2006 | SpVgg Bayreuth | - | SpVgg Weiden | 2:2 | ||||
| 24. Round | 24/02/2007 | SpVgg Weiden | - | VfL Frohnlach | 2:0 | |
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| 25. Round | 04/03/2007 | SC Fürstenfeldbruck | - | SpVgg Weiden | 0:2 | ||||
| 26. Round | 09/03/2007 | SpVgg Weiden | - | Jahn Regensburg | 0:0 | |
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| 27. Round | 17/03/2007 | Wacker Burghausen II | - | SpVgg Weiden | 0:1 | |
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| 29. Round | 31/03/2007 | SpVgg Unterhaching II | - | SpVgg Weiden | 2:1 | |
Germany