| 15. Round | 10/12/2016 | VfL Halle 96 | - | FC Carl Zeiss Jena II | 1:2 |  |
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| 17. Round | 25/02/2017 | FC Carl Zeiss Jena II | - | FSV Barleben | 7:0 | ||||
| 19. Round | 11/03/2017 | FC Carl Zeiss Jena II | - | Union Sandersdorf | 2:3 | ||||
| 18. Round | 26/03/2017 | BSG Wismut Gera | - | FC Carl Zeiss Jena II | 2:1 | ||||
| 26. Round | 06/05/2017 | FC Carl Zeiss Jena II | - | Germania Halberstadt | 0:4 | |
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| 30. Round | 03/06/2017 | FC Carl Zeiss Jena II | - | VfL Halle 96 | 2:3 |
Germany