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| 20/04/2007 | 18:30 | 1. FC Magdeburg | - | Werder Bremen II | 2:0 (2:0) | |
| 18:30 | Wuppertaler SV | - | VfB Lübeck | 1:1 (0:1) | ||
| 21/04/2007 | 13:00 | Holstein Kiel | - | Hamburger SV II | 1:0 (0:0) | |
| 13:00 | Rot Weiss Ahlen | - | Kickers Emden | 1:1 (1:0) | ||
| 13:00 | Dynamo Dresden | - | Hertha BSC II | 2:0 (1:0) | ||
| 13:00 | Bor. Mönchengladbach II | - | FC St. Pauli | 1:5 (1:2) | ||
| 13:00 | Fortuna Düsseldorf | - | SV Wilhelmshaven | 1:1 (1:1) | ||
| 13:00 | VfL Osnabrück | - | Bayer Leverkusen II | 3:3 (1:1) | ||
| 13:15 | Rot-Weiß Erfurt | - | 1. FC Union Berlin | 1:0 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC St. Pauli | 30 | 14 | 9 | 7 | 41:29 | 12 | 51 |
| 2 |
|
VfL Osnabrück | 30 | 14 | 8 | 8 | 47:35 | 12 | 50 |
| 3 |
|
1. FC Magdeburg | 30 | 13 | 10 | 7 | 41:34 | 7 | 49 |
| 4 |
|
Dynamo Dresden | 30 | 14 | 6 | 10 | 41:33 | 8 | 48 |
| 5 |
|
Kickers Emden | 30 | 13 | 9 | 8 | 39:32 | 7 | 48 |
| 6 |
|
Rot Weiss Ahlen | 31 | 13 | 9 | 9 | 45:40 | 5 | 48 |
| 7 |
|
Hamburger SV II | 30 | 12 | 10 | 8 | 43:36 | 7 | 46 |
| 8 |
|
Wuppertaler SV | 30 | 12 | 9 | 9 | 43:39 | 4 | 45 |
| 9 |
|
VfB Lübeck | 31 | 13 | 5 | 13 | 41:37 | 4 | 44 |
| 10 |
|
1. FC Union Berlin | 30 | 12 | 7 | 11 | 38:27 | 11 | 43 |
| 11 |
|
Werder Bremen II | 31 | 12 | 7 | 12 | 46:42 | 4 | 43 |
| 12 |
|
Rot-Weiß Erfurt | 30 | 11 | 10 | 9 | 33:34 | -1 | 43 |
| 13 |
|
Fortuna Düsseldorf | 30 | 10 | 11 | 9 | 39:38 | 1 | 41 |
| 14 |
|
Holstein Kiel | 31 | 10 | 9 | 12 | 34:42 | -8 | 39 |
| 15 |
|
Borussia Dortmund II | 30 | 9 | 5 | 16 | 30:45 | -15 | 32 |
| 16 |
|
Bayer Leverkusen II | 30 | 7 | 9 | 14 | 33:44 | -11 | 30 |
| 17 |
|
SV Wilhelmshaven | 30 | 7 | 9 | 14 | 34:46 | -12 | 30 |
| 18 |
|
Hertha BSC II | 31 | 7 | 8 | 16 | 28:44 | -16 | 29 |
| 19 |
|
Bor. Mönchengladbach II | 31 | 6 | 8 | 17 | 33:52 | -19 | 26 |
