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| 28/11/2008 | 18:00 | TSV 1860 München II | - | Hessen Kassel | 2:1 (1:0) | |
| 29/11/2008 | 13:00 | Viktoria Aschaffenburg | - | SV Darmstadt 98 | 1:1 (1:1) | |
| 13:00 | 1. FC Eintracht Bamberg | - | SC Freiburg II | 2:0 (1:0) | ||
| 13:00 | 1. FC Nürnberg II | - | Eintracht Frankfurt II | 1:2 (0:2) | ||
| 13:00 | SV Wehen Wiesbaden II | - | TSV Großbardorf | 1:0 (0:0) | ||
| 30/11/2008 | 13:00 | Karlsruher SC II | - | SSV Reutlingen | 2:1 (0:0) | |
| 13:00 | SpVgg Unterhaching II | - | 1. FC Heidenheim 1846 | 0:2 (0:2) | ||
| 09/12/2008 | 17:00 | SSV Ulm 1846 | - | SpVgg Greuther Fürth II | 1:1 (0:0) | |
| 25/03/2009 | 18:00 | SC Pfullendorf | - | Waldhof Mannheim | 0:1 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Frankfurt II | 15 | 10 | 4 | 1 | 29:10 | 19 | 34 |
| 2 |
|
Waldhof Mannheim | 15 | 9 | 1 | 5 | 27:18 | 9 | 28 |
| 3 |
|
1. FC Heidenheim 1846 | 15 | 8 | 4 | 3 | 25:16 | 9 | 28 |
| 4 |
|
Hessen Kassel | 15 | 8 | 3 | 4 | 31:16 | 15 | 27 |
| 5 |
|
SSV Ulm 1846 | 15 | 6 | 8 | 1 | 24:14 | 10 | 26 |
| 6 |
|
SC Pfullendorf | 15 | 7 | 3 | 5 | 22:21 | 1 | 24 |
| 7 |
|
SV Wehen Wiesbaden II | 15 | 7 | 2 | 6 | 19:13 | 6 | 23 |
| 8 |
|
1. FC Nürnberg II | 15 | 6 | 4 | 5 | 23:18 | 5 | 22 |
| 9 |
|
SpVgg Greuther Fürth II | 15 | 5 | 5 | 5 | 17:14 | 3 | 20 |
| 10 |
|
TSV 1860 München II | 15 | 5 | 5 | 5 | 20:19 | 1 | 20 |
| 11 |
|
Karlsruher SC II | 15 | 5 | 4 | 6 | 19:22 | -3 | 19 |
| 12 |
|
SV Darmstadt 98 | 15 | 4 | 6 | 5 | 21:21 | 0 | 18 |
| 13 |
|
Viktoria Aschaffenburg | 15 | 3 | 8 | 4 | 14:17 | -3 | 17 |
| 14 |
|
1. FC Eintracht Bamberg | 15 | 4 | 5 | 6 | 28:34 | -6 | 17 |
| 15 |
|
SSV Reutlingen | 15 | 4 | 4 | 7 | 16:24 | -8 | 16 |
| 16 |
|
TSV Großbardorf | 15 | 2 | 5 | 8 | 15:35 | -20 | 11 |
| 17 |
|
SC Freiburg II | 15 | 2 | 4 | 9 | 12:30 | -18 | 10 |
| 18 |
|
SpVgg Unterhaching II | 15 | 1 | 3 | 11 | 14:34 | -20 | 6 |
| Promotion | |
| Relegation |
