| DFB-Pokal | M. | W | D | L | goals | |||
| Away | 1 | 0 | 1 | 0 | 1 | : | 1 | |
| ∑ | 1 | 0 | 1 | 0 | 1 | : | 1 | |
| Regionalliga Süd (1994-2012) | M. | W | D | L | goals | |||
| at home | 1 | 0 | 0 | 1 | 0 | : | 1 | |
| Away | 1 | 0 | 0 | 1 | 0 | : | 2 | |
| ∑ | 2 | 0 | 0 | 2 | 0 | : | 3 | |
| overall | M. | W | D | L | goals | |||
| at home | 1 | 0 | 0 | 1 | 0 | : | 1 | |
| Away | 2 | 0 | 1 | 1 | 1 | : | 3 | |
| Neutral Place | 0 | 0 | 0 | 0 | 0 | : | 0 | |
| ∑ | 3 | 0 | 1 | 2 | 1 | : | 4 | |
| DFB-Pokal | |||||
| 1997/1998 | 2. Round | VfR Mannheim | - | FC Carl Zeiss Jena | 3:4 (1:1, 1:1, 1:1) pso |
| Regionalliga Süd (1994-2012) | |||||
| 2000/2001 | 25. Round | VfR Mannheim | - | FC Carl Zeiss Jena | 2:0 (2:0) |
| 2000/2001 | 8. Round | FC Carl Zeiss Jena | - | VfR Mannheim | 0:1 (0:1) |
|
For games that were decided on penalties the score after 120 minutes will be included in the ranking |
Germany 
![FC Carl Zeiss Jena [Women]](https://s.hs-data.com/bilder/wappen/mini/2382.gif?fallback=png "FC Carl Zeiss Jena [Women]"){kind=small}
![FC Carl Zeiss Jena II [Women]](https://s.hs-data.com/bilder/wappen/mini/12519.gif?fallback=png "FC Carl Zeiss Jena II [Women]"){kind=small}
![FC Carl Zeiss Jena [Youth]](https://s.hs-data.com/bilder/wappen/mini/10850.gif?fallback=png "FC Carl Zeiss Jena [Youth]"){kind=small}
![FC Carl Zeiss Jena [Youth B]](https://s.hs-data.com/bilder/wappen/mini/14892.gif?fallback=png "FC Carl Zeiss Jena [Youth B]"){kind=small}
![FC Carl Zeiss Jena II [Youth B]](https://s.hs-data.com/bilder/wappen/mini/37759.gif?fallback=png "FC Carl Zeiss Jena II [Youth B]"){kind=small}
![FC Carl Zeiss Jena [Youth B Women]](https://s.hs-data.com/bilder/wappen/mini/13944.gif?fallback=png "FC Carl Zeiss Jena [Youth B Women]"){kind=small}
![FC Carl Zeiss Jena [Youth C]](https://s.hs-data.com/bilder/wappen/mini/20651.gif?fallback=png "FC Carl Zeiss Jena [Youth C]"){kind=small}
