| 2. Round | 24/08/2008 | SpVgg Unterhaching II | - | Viktoria Aschaffenburg | 1:2 | ||||
| 3. Round | 31/08/2008 | SpVgg Unterhaching II | - | Karlsruher SC II | 2:2 |  |
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| 7. Round | 05/10/2008 | SpVgg Unterhaching II | - | 1. FC Eintracht Bamberg | 2:4 | ||||
| 15. Round | 30/11/2008 | SpVgg Unterhaching II | - | 1. FC Heidenheim 1846 | 0:2 | ||||
| 18. Round | 15/02/2009 | SpVgg Unterhaching II | - | SV Wehen Wiesbaden II | 0:2 | ||||
| 21. Round | 08/03/2009 | SpVgg Unterhaching II | - | 1. FC Nürnberg II | 1:1 | ||||
| 22. Round | 18/03/2009 | SC Pfullendorf | - | SpVgg Unterhaching II | 3:1 | ||||
| 23. Round | 22/03/2009 | SpVgg Unterhaching II | - | SSV Ulm 1846 | 0:0 | ||||
| 27. Round | 26/04/2009 | SpVgg Unterhaching II | - | SC Freiburg II | 1:4 |  |
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| 29. Round | 10/05/2009 | SpVgg Unterhaching II | - | Waldhof Mannheim | 1:2 | ||||
| 31. Round | 17/05/2009 | SpVgg Unterhaching II | - | SSV Reutlingen | 0:1 |  |
Germany