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| 1st(1st leg) | BATE Borisov | - | Bohemian FC | 1:0 (1:0) | ||
| 2nd (2nd leg) | Bohemian FC | - | BATE Borisov | 3:0 (2:0) | ||
| 1st(1st leg): 16/07/2003 16:00 | 2nd (2nd leg): 23/07/2003 19:45 | Winner: Bohemian FC | ||||
| 1st(1st leg) | Dinamo Tbilisi | - | KF Tiranë | 3:0 (2:0) | ||
| 2nd (2nd leg) | KF Tiranë | - | Dinamo Tbilisi | 4:2 (1:0, 3:0, 3:0) pso | ||
| 1st(1st leg): 16/07/2003 16:00 | 2nd (2nd leg): 23/07/2003 17:00 | Winner: KF Tiranë | ||||
| 1st(1st leg) | Pyunik FC | - | KR Reykjavík | 1:0 (0:0) | ||
| 2nd (2nd leg) | KR Reykjavík | - | Pyunik FC | 1:1 (0:0) | ||
| 1st(1st leg): 16/07/2003 16:15 | 2nd (2nd leg): 23/07/2003 21:00 | Winner: Pyunik FC | ||||
| 1st(1st leg) | Sliema Wanderers | - | Skonto FC | 2:0 (0:0) | ||
| 2nd (2nd leg) | Skonto FC | - | Sliema Wanderers | 3:1 (1:0) | ||
| 1st(1st leg): 16/07/2003 16:30 | 2nd (2nd leg): 23/07/2003 16:30 | Winner: Sliema Wanderers | ||||
| 1st(1st leg) | FC Sheriff | - | FC Flora | 1:0 (0:0) | ||
| 2nd (2nd leg) | FC Flora | - | FC Sheriff | 1:1 (0:0) | ||
| 1st(1st leg): 16/07/2003 18:00 | 2nd (2nd leg): 23/07/2003 17:00 | Winner: FC Sheriff | ||||
| 1st(1st leg) | Omonia Nikosia | - | Irtysh Pavlodar | 0:0 (0:0) | ||
| 2nd (2nd leg) | Irtysh Pavlodar | - | Omonia Nikosia | 1:2 (1:0) | ||
| 1st(1st leg): 16/07/2003 18:00 | 2nd (2nd leg): 23/07/2003 13:00 | Winner: Omonia Nikosia | ||||
| 1st(1st leg) | HB Tórshavn | - | FBK Kaunas | 0:1 (0:0) | ||
| 2nd (2nd leg) | FBK Kaunas | - | HB Tórshavn | 4:1 (3:1) | ||
| 1st(1st leg): 16/07/2003 19:00 | 2nd (2nd leg): 23/07/2003 15:30 | Winner: FBK Kaunas | ||||
| 1st(1st leg) | Vardar Skopje | - | Barry Town FC | 3:0 (1:0) | ||
| 2nd (2nd leg) | Barry Town FC | - | Vardar Skopje | 2:1 (1:0) | ||
| 1st(1st leg): 16/07/2003 19:00 | 2nd (2nd leg): 23/07/2003 20:00 | Winner: Vardar Skopje | ||||
| 1st(1st leg) | CS Grevenmacher | - | Leotar Trebinje | 0:0 (0:0) | ||
| 2nd (2nd leg) | Leotar Trebinje | - | CS Grevenmacher | 2:0 (1:0) | ||
| 1st(1st leg): 16/07/2003 19:00 | 2nd (2nd leg): 23/07/2003 16:00 | Winner: Leotar Trebinje | ||||
| 1st(1st leg) | Glentoran FC | - | HJK Helsinki | 0:0 (0:0) | ||
| 2nd (2nd leg) | HJK Helsinki | - | Glentoran FC | 1:0 (0:0) | ||
| 1st(1st leg): 16/07/2003 19:30 | 2nd (2nd leg): 23/07/2003 17:00 | Winner: HJK Helsinki | ||||
