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| 1st(1st leg) | FK Vllaznia | - | Sliema Wanderers | 2:0 (0:0) | ||
| 2nd (2nd leg) | Sliema Wanderers | - | FK Vllaznia | 0:4 (0:1) | ||
| 1st(1st leg): 13/09/1987 | 2nd (2nd leg): 29/09/1987 | Winner: FK Vllaznia | ||||
| 1st(1st leg) | Avenir Beggen | - | Hamburger SV | 0:5 (0:2) | ||
| 2nd (2nd leg) | Hamburger SV | - | Avenir Beggen | 3:0 (1:0) | ||
| 1st(1st leg): 15/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Hamburger SV | ||||
| 1st(1st leg) | Sporting CP | - | FC Tirol | 4:0 (3:0) | ||
| 2nd (2nd leg) | FC Tirol | - | Sporting CP | 4:2 (1:0) | ||
| 1st(1st leg): 15/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Sporting CP | ||||
| 1st(1st leg) | ÍA Akranes | - | Kalmar FF | 0:0 (0:0) | ||
| 2nd (2nd leg) | Kalmar FF | - | ÍA Akranes | 1:0 (0:0, 0:0) aet | ||
| 1st(1st leg): 15/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Kalmar FF | ||||
| 1st(1st leg) | Rovaniemi PS | - | Glentoran FC | 0:0 (0:0) | ||
| 2nd (2nd leg) | Glentoran FC | - | Rovaniemi PS | 1:1 (0:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 28/09/1987 | Winner: Rovaniemi PS | ||||
| 1st(1st leg) | Real Sociedad | - | Śląsk Wrocław | 0:0 (0:0) | ||
| 2nd (2nd leg) | Śląsk Wrocław | - | Real Sociedad | 0:2 (0:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Real Sociedad | ||||
| 1st(1st leg) | 1. FC Lokomotive Leipzig | - | Olympique Marseille | 0:0 (0:0) | ||
| 2nd (2nd leg) | Olympique Marseille | - | 1. FC Lokomotive Leipzig | 1:0 (1:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Olympique Marseille | ||||
| 1st(1st leg) | KV Mechelen | - | Dinamo Bucureşti | 1:0 (0:0) | ||
| 2nd (2nd leg) | Dinamo Bucureşti | - | KV Mechelen | 0:2 (0:1) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: KV Mechelen | ||||
| 1st(1st leg) | Aalborg BK | - | Hajduk Split | 1:0 (0:0) | ||
| 2nd (2nd leg) | Hajduk Split | - | Aalborg BK | 4:2 (1:0, 1:0, 1:0) pso | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Hajduk Split | ||||
| 1st(1st leg) | AFC Ajax | - | Dundalk FC | 4:0 (0:0) | ||
| 2nd (2nd leg) | Dundalk FC | - | AFC Ajax | 0:2 (0:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: AFC Ajax | ||||
| 1st(1st leg) | Dinamo Minsk | - | Gençlerbirliği | 2:0 (0:0) | ||
| 2nd (2nd leg) | Gençlerbirliği | - | Dinamo Minsk | 1:2 (1:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Dinamo Minsk | ||||
| 1st(1st leg) | FC DAC 1904 | - | BSC Young Boys | 2:1 (2:1) | ||
| 2nd (2nd leg) | BSC Young Boys | - | FC DAC 1904 | 3:1 (0:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: BSC Young Boys | ||||
| 1st(1st leg) | Vitosha Sofia | - | OFI Heraklion | 1:0 (0:0) | ||
| 2nd (2nd leg) | OFI Heraklion | - | Vitosha Sofia | 3:1 (1:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: OFI Heraklion | ||||
| 1st(1st leg) | Újpesti Dózsa SC | - | FC Den Haag | 1:0 (1:0) | ||
| 2nd (2nd leg) | FC Den Haag | - | Újpesti Dózsa SC | 3:1 (2:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: FC Den Haag | ||||
| 1st(1st leg) | St. Mirren FC | - | Tromsø IL | 1:0 (1:0) | ||
| 2nd (2nd leg) | Tromsø IL | - | St. Mirren FC | 0:0 (0:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: St. Mirren FC | ||||
| 1st(1st leg) | Merthyr Tydfil FC | - | Atalanta | 2:1 (1:1) | ||
| 2nd (2nd leg) | Atalanta | - | Merthyr Tydfil FC | 2:0 (2:0) | ||
| 1st(1st leg): 16/09/1987 | 2nd (2nd leg): 30/09/1987 | Winner: Atalanta | ||||
