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| 1st(1st leg) | FC Basel | - | UMF Grindavík | 3:0 (2:0) | ||
| 2nd (2nd leg) | UMF Grindavík | - | FC Basel | 0:2 (0:1) | ||
| 1st(1st leg): 30/06/2001 14:00 | 2nd (2nd leg): 08/07/2001 15:00 | Winner: FC Basel | ||||
| 1st(1st leg) | Slaven Belupo | - | SC Bastia | 1:0 (1:0) | ||
| 2nd (2nd leg) | SC Bastia | - | Slaven Belupo | 0:1 (0:1) | ||
| 1st(1st leg): 30/06/2001 16:00 | 2nd (2nd leg): 07/07/2001 19:00 | Winner: Slaven Belupo | ||||
| 1st(1st leg) | FK Pobeda | - | Çaykur Rizespor | 2:1 (1:1) | ||
| 2nd (2nd leg) | Çaykur Rizespor | - | FK Pobeda | 0:2 (0:1) | ||
| 1st(1st leg): 30/06/2001 17:00 | 2nd (2nd leg): 07/07/2001 17:00 | Winner: FK Pobeda | ||||
| 1st(1st leg) | Dinamo Minsk | - | Hapoel Haifa | 2:0 (1:0) | ||
| 2nd (2nd leg) | Hapoel Haifa | - | Dinamo Minsk | 0:1 (0:1) | ||
| 1st(1st leg): 30/06/2001 18:00 | 2nd (2nd leg): 08/07/2001 17:30 | Winner: Dinamo Minsk | ||||
| 1st(1st leg) | Čelik Zenica | - | KAA Gent | 1:0 (1:0) | ||
| 2nd (2nd leg) | KAA Gent | - | Čelik Zenica | 2:0 (1:0) | ||
| 1st(1st leg): 30/06/2001 19:00 | 2nd (2nd leg): 07/07/2001 19:00 | Winner: KAA Gent | ||||
| 1st(1st leg) | ESTAC Troyes | - | WIT Georgia | 6:0 (3:0) | ||
| 2nd (2nd leg) | WIT Georgia | - | ESTAC Troyes | 1:1 (0:0) | ||
| 1st(1st leg): 30/06/2001 19:00 | 2nd (2nd leg): 08/07/2001 19:00 | Winner: ESTAC Troyes | ||||
| 1st(1st leg) | Sturm Graz | - | Lausanne Sports | 0:1 (0:0) | ||
| 2nd (2nd leg) | Lausanne Sports | - | Sturm Graz | 3:3 (1:1) | ||
| 1st(1st leg): 30/06/2001 19:00 | 2nd (2nd leg): 07/07/2001 18:30 | Winner: Lausanne Sports | ||||
| 1st(1st leg) | Odense BK | - | AIK Solna | 2:2 (1:2) | ||
| 2nd (2nd leg) | AIK Solna | - | Odense BK | 2:0 (1:0) | ||
| 1st(1st leg): 01/07/2001 14:00 | 2nd (2nd leg): 07/07/2001 16:00 | Winner: AIK Solna | ||||
| 1st(1st leg) | TSV 1860 München | - | FK Smederevo | 3:1 (1:0) | ||
| 2nd (2nd leg) | FK Smederevo | - | TSV 1860 München | 2:3 (1:1) | ||
| 1st(1st leg): 01/07/2001 14:00 | 2nd (2nd leg): 07/07/2001 16:30 | Winner: TSV 1860 München | ||||
| 1st(1st leg) | 1. FC Synot Stare Mesto | - | FC Universitatea Craiova | 3:2 (1:0) | ||
| 2nd (2nd leg) | FC Universitatea Craiova | - | 1. FC Synot Stare Mesto | 2:2 (0:2) | ||
| 1st(1st leg): 01/07/2001 15:30 | 2nd (2nd leg): 07/07/2001 17:00 | Winner: 1. FC Synot Stare Mesto | ||||
| 1st(1st leg) | Zagłębie Lubin | - | Sporting Lokeren | 2:2 (1:0) | ||
| 2nd (2nd leg) | Sporting Lokeren | - | Zagłębie Lubin | 2:1 (1:0) | ||
| 1st(1st leg): 01/07/2001 16:00 | 2nd (2nd leg): 07/07/2001 19:00 | Winner: Sporting Lokeren | ||||
| 1st(1st leg) | Paris Saint-Germain | - | FC Jazz Pori | 3:0 (1:0) | ||
| 2nd (2nd leg) | FC Jazz Pori | - | Paris Saint-Germain | 1:4 (0:2) | ||
| 1st(1st leg): 01/07/2001 17:00 | 2nd (2nd leg): 08/07/2001 18:00 | Winner: Paris Saint-Germain | ||||
| 1st(1st leg) | FK Liepājas Metalurgs | - | sc Heerenveen | 3:2 (1:1) | ||
| 2nd (2nd leg) | sc Heerenveen | - | FK Liepājas Metalurgs | 6:1 (2:1) | ||
| 1st(1st leg): 01/07/2001 17:00 | 2nd (2nd leg): 07/07/2001 18:30 | Winner: sc Heerenveen | ||||
| 1st(1st leg) | Tiligul Tiraspol | - | Lombard FC Tatabanya | 1:1 (0:0) | ||
| 2nd (2nd leg) | Lombard FC Tatabanya | - | Tiligul Tiraspol | 4:0 (0:0) | ||
| 1st(1st leg): 01/07/2001 17:00 | 2nd (2nd leg): 07/07/2001 16:00 | Winner: Lombard FC Tatabanya | ||||
| 1st(1st leg) | NK Publikum Celje | - | FK Artmedia Petržalka | 5:0 (2:0) | ||
| 2nd (2nd leg) | FK Artmedia Petržalka | - | NK Publikum Celje | 1:1 (1:1) | ||
| 1st(1st leg): 01/07/2001 17:00 | 2nd (2nd leg): 08/07/2001 17:00 | Winner: NK Publikum Celje | ||||
| 1st(1st leg) | Spartak Varna | - | Tavriya Simferopol (1958-2014) | 0:3 dec. | ||
| 2nd (2nd leg) | Tavriya Simferopol (1958-2014) | - | Spartak Varna | 2:2 (2:1) | ||
| 1st(1st leg): 01/07/2001 17:30 | 2nd (2nd leg): 08/07/2001 18:00 | Winner: Tavriya Simferopol (1958-2014) | ||||
