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| 1st(1st leg) | Bangor City | - | Gloria Bistrița (old) | 0:1 (0:0) | ||
| 2nd (2nd leg) | Gloria Bistrița (old) | - | Bangor City | 5:2 (1:1) | ||
| 1st(1st leg): 21/06/2003 15:00 | 2nd (2nd leg): 28/06/2003 14:00 | Winner: Gloria Bistrița (old) | ||||
| 1st(1st leg) | Shakhter Soligorsk | - | Omagh Town FC | 1:0 (1:0) | ||
| 2nd (2nd leg) | Omagh Town FC | - | Shakhter Soligorsk | 1:7 (1:4) | ||
| 1st(1st leg): 21/06/2003 16:00 | 2nd (2nd leg): 28/06/2003 17:00 | Winner: Shakhter Soligorsk | ||||
| 1st(1st leg) | FK Partizani | - | Maccabi Netanya | 2:0 (2:0) | ||
| 2nd (2nd leg) | Maccabi Netanya | - | FK Partizani | 3:1 (1:1) | ||
| 1st(1st leg): 21/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 16:00 | Winner: FK Partizani | ||||
| 1st(1st leg) | 1. FC Brno | - | FC Kotayk | 1:0 (1:0) | ||
| 2nd (2nd leg) | FC Kotayk | - | 1. FC Brno | 3:2 (1:0) | ||
| 1st(1st leg): 21/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 15:00 | Winner: 1. FC Brno | ||||
| 1st(1st leg) | FC Dinaburg | - | FC Wil 1900 | 1:0 (1:0) | ||
| 2nd (2nd leg) | FC Wil 1900 | - | FC Dinaburg | 2:0 (2:0) | ||
| 1st(1st leg): 21/06/2003 17:00 | 2nd (2nd leg): 29/06/2003 17:00 | Winner: FC Wil 1900 | ||||
| 1st(1st leg) | ZTS Dubnica | - | Olympiakos Nikosia | 3:0 (1:0) | ||
| 2nd (2nd leg) | Olympiakos Nikosia | - | ZTS Dubnica | 1:4 (0:3) | ||
| 1st(1st leg): 21/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 18:00 | Winner: ZTS Dubnica | ||||
| 1st(1st leg) | Dacia Chişinău | - | GÍ Gøta | 4:1 (1:0) | ||
| 2nd (2nd leg) | GÍ Gøta | - | Dacia Chişinău | 0:1 (0:0) | ||
| 1st(1st leg): 21/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 19:00 | Winner: Dacia Chişinău | ||||
| 1st(1st leg) | OFK Beograd | - | JK Narva Trans | annull. | ||
| 2nd (2nd leg) | JK Narva Trans | - | OFK Beograd | 3:5 (3:2, 3:3) aet | ||
| 1st(1st leg): 21/06/2003 17:15 | 2nd (2nd leg): 29/06/2003 15:00 | Winner: OFK Beograd | ||||
| 1st(1st leg) | Sloboda Tuzla | - | KA Akureyri | 1:1 (0:0) | ||
| 2nd (2nd leg) | KA Akureyri | - | Sloboda Tuzla | 2:3 (0:1, 1:1, 1:1) pso | ||
| 1st(1st leg): 21/06/2003 18:00 | 2nd (2nd leg): 28/06/2003 16:00 | Winner: Sloboda Tuzla | ||||
| 1st(1st leg) | Győri ETO FC | - | Ethnikos Achna | 1:1 (0:1) | ||
| 2nd (2nd leg) | Ethnikos Achna | - | Győri ETO FC | 2:2 (2:1) | ||
| 1st(1st leg): 21/06/2003 19:00 | 2nd (2nd leg): 28/06/2003 15:00 | Winner: Győri ETO FC | ||||
| 1st(1st leg) | Odra Wodzisław | - | Shamrock Rovers | 1:2 (0:0) | ||
| 2nd (2nd leg) | Shamrock Rovers | - | Odra Wodzisław | 1:0 (0:0) | ||
| 1st(1st leg): 21/06/2003 19:00 | 2nd (2nd leg): 29/06/2003 15:15 | Winner: Shamrock Rovers | ||||
| 1st(1st leg) | FC Encamp | - | Lierse SK | 0:3 (0:2) | ||
| 2nd (2nd leg) | Lierse SK | - | FC Encamp | 4:1 (2:1) | ||
| 1st(1st leg): 22/06/2003 11:00 | 2nd (2nd leg): 29/06/2003 17:00 | Winner: Lierse SK | ||||
| 1st(1st leg) | FK Zalgiris | - | Örgryte IS | 1:1 (0:0) | ||
| 2nd (2nd leg) | Örgryte IS | - | FK Zalgiris | 3:0 (0:0) | ||
| 1st(1st leg): 22/06/2003 15:00 | 2nd (2nd leg): 28/06/2003 14:00 | Winner: Örgryte IS | ||||
| 1st(1st leg) | Sport Line Koper | - | NK Zagreb | 1:0 (0:0) | ||
| 2nd (2nd leg) | NK Zagreb | - | Sport Line Koper | 2:2 (0:1) | ||
| 1st(1st leg): 22/06/2003 16:30 | 2nd (2nd leg): 28/06/2003 16:30 | Winner: Sport Line Koper | ||||
| 1st(1st leg) | FK Sutjeska | - | Union Luxembourg | 3:0 (0:0) | ||
| 2nd (2nd leg) | Union Luxembourg | - | FK Sutjeska | 1:1 (0:1) | ||
| 1st(1st leg): 22/06/2003 16:30 | 2nd (2nd leg): 29/06/2003 16:00 | Winner: FK Sutjeska | ||||
| 1st(1st leg) | AC Allianssi | - | Hibernians FC | 1:0 (0:0) | ||
| 2nd (2nd leg) | Hibernians FC | - | AC Allianssi | 1:1 (1:0) | ||
| 1st(1st leg): 22/06/2003 16:30 | 2nd (2nd leg): 28/06/2003 16:30 | Winner: AC Allianssi | ||||
| 1st(1st leg) | SV PlusCity Pasching | - | WIT Georgia | 1:0 (0:0) | ||
| 2nd (2nd leg) | WIT Georgia | - | SV PlusCity Pasching | 2:1 (0:0) | ||
| 1st(1st leg): 22/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 14:00 | Winner: SV PlusCity Pasching | ||||
| 1st(1st leg) | Spartak Trnava | - | FK Pobeda | 1:5 (1:3) | ||
| 2nd (2nd leg) | FK Pobeda | - | Spartak Trnava | 2:1 (1:0) | ||
| 1st(1st leg): 22/06/2003 17:00 | 2nd (2nd leg): 28/06/2003 16:30 | Winner: FK Pobeda | ||||
| 1st(1st leg) | Videoton FC | - | Marek Dupnitza | 2:2 (2:0) | ||
| 2nd (2nd leg) | Marek Dupnitza | - | Videoton FC | 3:2 (2:0, 2:2) aet | ||
| 1st(1st leg): 22/06/2003 17:00 | 2nd (2nd leg): 29/06/2003 15:30 | Winner: Marek Dupnitza | ||||
| 1st(1st leg) | Tampere United | - | Ceahlăul Piatra Neamt | 1:0 (1:0) | ||
| 2nd (2nd leg) | Ceahlăul Piatra Neamt | - | Tampere United | 2:1 (1:0) | ||
| 1st(1st leg): 22/06/2003 17:00 | 2nd (2nd leg): 29/06/2003 16:00 | Winner: Tampere United | ||||
| 1st(1st leg) | Polonia Warszawa | - | Tobyl Kostanay | 0:3 (0:1) | ||
| 2nd (2nd leg) | Tobyl Kostanay | - | Polonia Warszawa | 2:1 (0:1) | ||
| 1st(1st leg): 22/06/2003 17:00 | 2nd (2nd leg): 29/06/2003 13:00 | Winner: Tobyl Kostanay | ||||
