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| 1st(1st leg) | FK Pobeda | - | FC Superfund | 1:1 (1:0) | ||
| 2nd (2nd leg) | FC Superfund | - | FK Pobeda | 2:1 (0:0) | ||
| 1st(1st leg): 05/07/2003 16:00 | 2nd (2nd leg): 12/07/2003 18:30 | Winner: FC Superfund | ||||
| 1st(1st leg) | Örgryte IS | - | OGC Nice | 3:2 (1:1) | ||
| 2nd (2nd leg) | OGC Nice | - | Örgryte IS | 2:1 (2:1) | ||
| 1st(1st leg): 05/07/2003 16:00 | 2nd (2nd leg): 12/07/2003 19:00 | Winner: OGC Nice | ||||
| 1st(1st leg) | Shakhter Soligorsk | - | HNK Cibalia | 1:1 (1:0) | ||
| 2nd (2nd leg) | HNK Cibalia | - | Shakhter Soligorsk | 4:2 (1:2) | ||
| 1st(1st leg): 05/07/2003 16:00 | 2nd (2nd leg): 12/07/2003 17:00 | Winner: HNK Cibalia | ||||
| 1st(1st leg) | Marek Dupnitza | - | VfL Wolfsburg | 1:1 (0:1) | ||
| 2nd (2nd leg) | VfL Wolfsburg | - | Marek Dupnitza | 2:0 (1:0) | ||
| 1st(1st leg): 05/07/2003 16:15 | 2nd (2nd leg): 12/07/2003 19:00 | Winner: VfL Wolfsburg | ||||
| 1st(1st leg) | Dacia Chişinău | - | FK Partizani | 2:0 (0:0) | ||
| 2nd (2nd leg) | FK Partizani | - | Dacia Chişinău | 0:3 (0:2) | ||
| 1st(1st leg): 05/07/2003 17:00 | 2nd (2nd leg): 12/07/2003 17:00 | Winner: Dacia Chişinău | ||||
| 1st(1st leg) | FC Anet Koper | - | ZTS Dubnica | 1:0 (0:0) | ||
| 2nd (2nd leg) | ZTS Dubnica | - | FC Anet Koper | 3:2 (1:2) | ||
| 1st(1st leg): 05/07/2003 17:00 | 2nd (2nd leg): 12/07/2003 17:00 | Winner: FC Anet Koper | ||||
| 1st(1st leg) | FC Thun | - | 1. FC Brno | 2:3 (1:1) | ||
| 2nd (2nd leg) | 1. FC Brno | - | FC Thun | 1:1 (1:0) | ||
| 1st(1st leg): 05/07/2003 18:00 | 2nd (2nd leg): 12/07/2003 17:00 | Winner: 1. FC Brno | ||||
| 1st(1st leg) | Sloboda Tuzla | - | Lierse SK (old) | 1:0 (0:0) | ||
| 2nd (2nd leg) | Lierse SK (old) | - | Sloboda Tuzla | 5:1 (0:1) | ||
| 1st(1st leg): 05/07/2003 18:30 | 2nd (2nd leg): 12/07/2003 18:00 | Winner: Lierse SK (old) | ||||
| 1st(1st leg) | Willem II | - | FC Wil 1900 | 2:1 (1:1) | ||
| 2nd (2nd leg) | FC Wil 1900 | - | Willem II | 3:1 (1:0) | ||
| 1st(1st leg): 05/07/2003 18:30 | 2nd (2nd leg): 12/07/2003 18:00 | Winner: FC Wil 1900 | ||||
| 1st(1st leg) | Brescia Calcio | - | Gloria Bistrița (old) | 2:1 (1:1) | ||
| 2nd (2nd leg) | Gloria Bistrița (old) | - | Brescia Calcio | 1:1 (0:0) | ||
| 1st(1st leg): 05/07/2003 19:30 | 2nd (2nd leg): 12/07/2003 15:00 | Winner: Brescia Calcio | ||||
| 1st(1st leg) | Sint-Truidense VV | - | Tobyl Kostanay | 0:2 (0:1) | ||
| 2nd (2nd leg) | Tobyl Kostanay | - | Sint-Truidense VV | 1:0 (0:0) | ||
| 1st(1st leg): 06/07/2003 16:00 | 2nd (2nd leg): 12/07/2003 11:00 | Winner: Tobyl Kostanay | ||||
| 1st(1st leg) | 1. FC Synot Stare Mesto | - | OFK Beograd | 1:0 (0:0) | ||
| 2nd (2nd leg) | OFK Beograd | - | 1. FC Synot Stare Mesto | 3:3 (1:1) | ||
| 1st(1st leg): 06/07/2003 16:00 | 2nd (2nd leg): 12/07/2003 16:30 | Winner: 1. FC Synot Stare Mesto | ||||
| 1st(1st leg) | Slovan Liberec | - | Shamrock Rovers | 2:0 (2:0) | ||
| 2nd (2nd leg) | Shamrock Rovers | - | Slovan Liberec | 0:2 (0:0) | ||
| 1st(1st leg): 06/07/2003 16:30 | 2nd (2nd leg): 13/07/2003 15:15 | Winner: Slovan Liberec | ||||
| 1st(1st leg) | Akratitos Liosion | - | AC Allianssi | 0:1 (0:0) | ||
| 2nd (2nd leg) | AC Allianssi | - | Akratitos Liosion | 0:0 (0:0) | ||
| 1st(1st leg): 06/07/2003 17:00 | 2nd (2nd leg): 13/07/2003 16:30 | Winner: AC Allianssi | ||||
| 1st(1st leg) | Tampere United | - | FK Sutjeska | 0:0 (0:0) | ||
| 2nd (2nd leg) | FK Sutjeska | - | Tampere United | 0:1 (0:0) | ||
| 1st(1st leg): 06/07/2003 17:00 | 2nd (2nd leg): 13/07/2003 16:00 | Winner: Tampere United | ||||
| 1st(1st leg) | Racing Santander | - | Győri ETO FC | 1:0 (1:0) | ||
| 2nd (2nd leg) | Győri ETO FC | - | Racing Santander | 2:1 (1:0) | ||
| 1st(1st leg): 06/07/2003 17:00 | 2nd (2nd leg): 12/07/2003 18:00 | Winner: Racing Santander | ||||
